Package Info

libhts


C library for high-throughput sequencing data formats


Productivity/Scientific/Other

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib implements a generalized BAM index, with file extension .csi (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. This project also includes the popular tabix indexer, which indexes both .tbi and .csi formats, and the bgzip compression utility.


License: MIT
URL: https://github.com/samtools/htslib/

Categories

Releases

Package Version Update ID Released Package Hub Version Platforms Subpackages
1.12-bp154.1.22 info GA Release 2022-05-12 15 SP4
  • AArch64
  • ppc64le
  • s390x
  • x86-64
  • bgzip
  • bgzip-debuginfo
  • htsfile
  • htsfile-debuginfo
  • libhts-debugsource
  • libhts-devel
  • libhts-devel-64bit
  • libhts3
  • libhts3-64bit
  • libhts3-64bit-debuginfo
  • libhts3-debuginfo
  • tabix
  • tabix-debuginfo
1.10.2-bp152.2.4.1 info openSUSE-2021-1177 2021-08-22 15 SP2 Update
  • AArch64
  • ppc64le
  • s390x
  • x86-64
  • bgzip
  • htsfile
  • libhts-devel
  • libhts-devel-64bit
  • libhts3
  • libhts3-64bit
  • tabix
1.10.2-bp153.2.5.1 info openSUSE-2021-1177 2021-08-22 15 SP3 Update
  • AArch64
  • ppc64le
  • s390x
  • x86-64
  • bgzip
  • htsfile
  • libhts-devel
  • libhts-devel-64bit
  • libhts3
  • libhts3-64bit
  • tabix
1.10.2-bp153.1.16 info GA Release 2021-03-06 15 SP3
  • AArch64
  • ppc64le
  • s390x
  • x86-64
  • bgzip
  • htsfile
  • libhts-devel
  • libhts-devel-64bit
  • libhts3
  • libhts3-64bit
  • tabix
1.10.2-bp152.1.10 info GA Release 2020-04-16 15 SP2
  • AArch64
  • ppc64le
  • s390x
  • x86-64
  • bgzip
  • htsfile
  • libhts-devel
  • libhts-devel-64bit
  • libhts3
  • libhts3-64bit
  • tabix