Package Release Info

hdf5-mvapich2-1.10.7-bp153.3.44

Update Info: Base Release
Available in Package Hub : 15 SP3

platforms

AArch64
ppc64le
s390x
x86-64

subpackages

hdf5-mvapich2
hdf5-mvapich2-devel
hdf5-mvapich2-devel-64bit
hdf5-mvapich2-devel-static
libhdf5-103-mvapich2
libhdf5-103-mvapich2-64bit
libhdf5_cpp103-mvapich2
libhdf5_cpp103-mvapich2-64bit
libhdf5_fortran102-mvapich2
libhdf5_fortran102-mvapich2-64bit
libhdf5_hl100-mvapich2
libhdf5_hl100-mvapich2-64bit
libhdf5_hl_cpp100-mvapich2
libhdf5_hl_cpp100-mvapich2-64bit
libhdf5hl_fortran100-mvapich2
libhdf5hl_fortran100-mvapich2-64bit

Change Logs

* Fri Jan 29 2021 Egbert Eich <eich@suse.com>
- Fix update_so_version.sh, write so versions to file being included.
* Fri Nov 06 2020 Ana Guerrero Lopez <aguerrero@suse.com>
- Update to version 1.10.7
  * Add metadata cache optimization to reduce skip list usage.
  * Add BEST_EFFORT value to HDF5_USE_FILE_LOCKING environment variable.
  * Add H5Pset/get_file_locking() API calls.
  * Add Mirror VFD.
    Use TCP/IP sockets to perform write-only (W/O) file I/O on a remote
    machine. Must be used in conjunction with the Splitter VFD.
  * Add Splitter VFD.
    Maintain separate R/W and W/O channels for "concurrent" file writes
    to two files using a single HDF5 file handle.
  * Fixed an assertion failure in the parallel library when collectively
  filling chunks.
  * Fortran/C++ libs: Add wrappers for H5Pset/get_file_locking() API calls.
    h5pget_file_locking_f()
    h5pset_file_locking_f()
  * Added new Fortran parameters:
    H5F_LIBVER_ERROR_F
    H5F_LIBVER_NBOUNDS_F
    H5F_LIBVER_V18_F
    H5F_LIBVER_V110_F
  * Add new Fortran API: h5pget_libver_bounds_f.
  * h5repack added options to control how external links are handled.
  * The tools library was updated by standardizing the error stack process.
  * The H5DSis_scale function was updated to return "not a dimension scale" (0)
    instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are
    not written according to Dimension Scales Specification.
  * Bug Fixes:
    + Fix bug and simplify collective metadata write operation when some ranks
    have no entries to contribute.  This fixes parallel regression test
    failures with IBM SpectrumScale MPI on the Summit system at ORNL.
    + Fixed use-of-uninitialized-value error.
    Appropriate initialization of local structs was added to remove the
    use-of-uninitialized-value errors reported by MemorySanitizer.
    + Creation of dataset with optional filter.
    A fix is applied to allow the creation of a dataset in such
    situation, as specified in the user documentation.
    + Explicitly declared dlopen to use RTLD_LOCAL.
    + H5Sset_extent_none() sets the dataspace class to H5S_NO_CLASS which
    causes asserts/errors when passed to other dataspace API calls.
    + Fixed the segmentation fault when reading attributes with multiple threads
    The problem was fixed by setting the file pointer to the current opened
    file pointer when the attribute was accessed.  Similar patch up was done
    before when reading dataset with variable length string datatype.
    + Don't allocate an empty (0-dimensioned) chunked dataset's chunk
    index, until the dataset's dimensions are increased.
    + Fortan: Corrected INTERFACE INTENT(IN) to INTENT(OUT) for buf_size in
    h5fget_file_image_f.
    + h5diff fixed a command line parsing error.
    + h5diff added a command line option to ignore attributes.
    + h5diff added another level to the verbose argument to print filenames.
    + h5repack was fixed to repack the reference attributes properly.
  * For details check:
    https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt
- version 1.10.6
  * Added S3 and HDFS Virtual File Drivers (VFDs) to HDF5.
    Instructions to enable them when configuring HDF5 on Linux and Mac
    may be found at.
    https://portal.hdfgroup.org/display/HDF5/Virtual+File+Drivers+-+S3+and+HDFS.
  * Added new wrappers for H5Pset/get_create_intermediate_group()
    LinkCreatPropList::setCreateIntermediateGroup()
    LinkCreatPropList::getCreateIntermediateGroup()
  * h5repack was fixed to repack datasets with external storage
    to other types of storage.
  * Bug Fixes:
    + Improved performance when creating a large number of small datasets by
    retrieving default property values from the API context instead of doing
    skip list searches. More work is required to achieve parity with HDF5 1.8.
    + Fixed user-created data access properties not existing in the property list
    returned by H5Dget_access_plist. Thanks to Steven Varga for submitting a
    reproducer and a patch.
    + Inappropriate linking with deprecated MPI C++ libraries.
    HDF5 does not define *_SKIP_MPICXX in the public headers, so applications
    can inadvertently wind up linking to the deprecated MPI C++ wrappers.
    MPICH_SKIP_MPICXX and OMPI_SKIP_MPICXX have both been defined in H5public.h
    so this should no longer be an issue. HDF5 makes no use of the deprecated
    MPI C++ wrappers.
    + fcntl(2)-based file locking incorrectly passed the lock argument struct
    instead of a pointer to the struct, causing errors on systems where
    flock(2) is not available.
    This bug affects HDF5 1.10.0 through 1.10.5.
    fcntl(2)-based file locking now correctly passes the struct pointer.
    + Fixed a bug caused by a bad tag value when condensing object header
    messages.
    + Fixed an issue when creating a file with non-default file space info
    together with library high bound setting to H5F_LIBVER_V18.
    This was fixed by setting and checking the proper version in the file
    space info message based on the library low and high bounds when creating
    and opening the HDF5 file.
    + Fixed an issue where copying a version 1.8 dataset between files using
    H5Ocopy fails due to an incompatible fill version.
    + Fixed a bug that would cause an error or cause fill values to be
    incorrectly read from a chunked dataset using the "single chunk" index if
    + Fixed a bug that could cause an error or cause fill values to be
    incorrectly read from a dataset that was written to using H5Dwrite_chunk
    if the dataset was not closed after writing.
    + Fixed memory leak in scale offset filter.
  * For details check:
    https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt
- Security bugs fixed:
  * CVE-2018-13870: heap-based buffer over-read in the function
    H5O_link_decode in H5Olink.c  (bsc#1101493)
  * CVE-2018-13869: memcpy parameter overlap in the function
    H5O_link_decode in H5Olink.c (bsc#1101495)
  * CVE-2018-17438:  A SIGFPE signal is raised in the function
    H5D__select_io() of H5Dselect.c in the HDF HDF5 through 1.10.3
    library during an attempted parse of a crafted HDF file,
    because of incorrect protection against division
    (bsc#1109570)
  * CVE-2018-17435: A heap-based buffer over-read in H5O_attr_decode()
    in H5Oattr.c in the HDF HDF5 through 1.10.3 library allows
    attackers to cause a denial of service via a crafted HDF5 file.
    (bsc#1109567)
- Refresh patches
* Thu Jul 23 2020 Egbert Eich <eich@suse.com>
- Add build support for gcc10 to HPC build (bsc#1174439).
* Mon Jul 20 2020 Egbert Eich <eich@suse.com>
- Add missing openmpi4 flavors.
- Enable build of non-HPC flavors for all non-HPC builds.
* Wed Jun 24 2020 Alin M Elena <alinm.elena@gmail.com>
- add openmpi4 packages to build and disable build for leap
Version: 1.10.1-bp150.3.1
* Fri Apr 27 2018 eich@suse.com
- Fix HPC library master packages dependency: make it require
  the correct flavor (bsc#1091237).
* Sat Apr 07 2018 eich@suse.com
- Only build one examples package for all flavors, do not
  include dependencies as these would be flavor specific
  (bsc#1088547).
* Sat Mar 31 2018 stefan.bruens@rwth-aachen.de
- Fix some typos, one trivial, two mispelled macros
* Sat Feb 10 2018 jengelh@inai.de
- Trim description for size and drop most of the marketing blurb.
  Fix RPM groups.
* Sat Feb 10 2018 eich@suse.com
- Make module files package arch dependent: it
  contains arch-dependent paths (boo#1080442).
* Sat Feb 10 2018 eich@suse.com
- Prepend PKG_CONFIG_PATH in modules file (boo#1080426).
* Fri Feb 09 2018 eich@suse.com
- Add support for openmpi2 for HPC (FATE#325089).
* Fri Feb 09 2018 cgoll@suse.com
- Fix summary in module files (bnc#1080259)
* Thu Feb 08 2018 eich@suse.com
- Disable %check stage for mpich builds on s390(x) (bsc#1080022).
* Fri Jan 12 2018 eich@suse.com
- Disable the openmpi3 flavor in some products.
* Fri Jan 05 2018 eich@suse.com
- Switch from gcc6 to gcc7 as additional compiler flavor for HPC on SLES.
- Add support for mpich and openmpi3 for HPC.
* Thu Nov 09 2017 normand@linux.vnet.ibm.com
-  temporarily disable make check for PowerPC boo#1058563
* Tue Nov 07 2017 eich@suse.com
- Update to 1.10.1:
  https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
- Fix-warnings-for-missing-returns.patch:
  replace: hdf5-non_void_return.patch
- PPC64LE-Fix-long-double-handling.patch:
  replace: hdf5-ldouble-ppc64le.patch
- Disable-phdf5-tests.patch:
  replace: hdf5_disable_testphdf5.patch
- Disabling validation tests for the MPI variant for now as they
  seem to cause issues in OBS.
* Thu Oct 26 2017 eich@suse.com
- Fix name: baselib.conf -> baselibs.conf
* Sun Oct 22 2017 eich@suse.com
- Remove openssl-devel and krb5-devel from the BuildRequires.
* Tue Oct 17 2017 eich@suse.com
- Add magic to limit the number of flavors built in the OBS ring
  to non-HPC and mvapich2 builds.
- Fix %libname() for non-HPC builds.
- Fix some summaries and a Requires: of devel-static.
* Fri Sep 08 2017 eich@suse.com
- Convert package to multibuild.
- Add HPC build using environment modules
  (FATE#321717, FATE#321710).
* Tue Aug 29 2017 hpj@urpla.net
- fix compiler flag substitution
* Mon Jul 03 2017 badshah400@gmail.com
- Add libsz2-devel to list of Requires for -devel packages, this
  is required for compilation against hdf5 when szlib support is
  enabled.
- Minor specfile cleanups using spec-cleaner.
* Fri Jun 16 2017 junghans@votca.org
- Enabled szlib support through libaec's szlib API
Version: 1.10.4-bp151.1.1
* Thu Apr 25 2019 Christian Goll <cgoll@suse.com>
- set higher constraints for succesfull mpich tests (boo#133222)
* Mon Apr 01 2019 normand@linux.vnet.ibm.com
- Add _constraints to avoid transient build error ppc64le
* Sat Mar 09 2019 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Update URL: and Source: to use https://.
* Fri Mar 01 2019 Egbert Eich <eich@suse.com>
- Like on PPC ignore transient 'make check' failures on aarch64.
* Fri Mar 01 2019 Egbert Eich <eich@suse.com>
- Like on PPC ignore transient 'make check' failures on aarch64.
* Wed Feb 13 2019 Egbert Eich <eich@suse.com>
- Consolidate use of openmpi1, openmpi2, openmpi3 for non-HPC builds.
* Fri Jan 25 2019 eich@suse.com
- Remove dependency to the hdf5-devel-data file for HPC:
  Currently, there are no macro files for HPC - these files
  will have to be handled differently.
- Re-disable all non-HPC builds for SLE.
* Mon Jan 14 2019 eich@suse.com
- Reenable 'serial' build for SLE: this build creates hdf5-devel-data.
* Thu Jan 03 2019 eich@suse.com
- Do not build non-HPC on SLE: This helps to save some build
  cycles.
* Wed Dec 19 2018 Todd R <toddrme2178@gmail.com>
- Use upstream-recommended %{_rpmconfigdir}/macros.d directory
  for the rpm macros.
* Wed Dec 12 2018 Todd R <toddrme2178@gmail.com>
- Also build for regular openmpi2 and openmpi3
* Thu Nov 22 2018 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Build HDF5 C++ bindings also for the MPI variants, there is no reason
  not to do it.
- Enable sz2 support also for MPI variants.
* Mon Nov 19 2018 eich@suse.com
- Replace git-archive generated by downloaded tar-ball.
* Sat Nov 17 2018 eich@suse.com
- Update to 1.10.4:
  https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4-RELEASE.txt
  * Update Disable-phdf5-tests.patch
  * Replace and update hdf5-buildcompare.patch by
    hdf5-Remove-timestamps-from-binaries.patch
* Fri Nov 16 2018 eich@suse.com
- Remove lib*_cpp and lib*_hl_cpp dependencies for MPI for the time
  being.
* Sun Nov 11 2018 eich@suse.com
- Create main master package, fix dependencies.
* Fri Sep 21 2018 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Update to 1.10.3:
  https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt
- Update to 1.10.2:
  https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
- Bump soversions (101 -> 103) for libhdf5 and libhdf5_cpp
- Drop Fix-warnings-for-missing-returns.patch, fixed upstream
- Add 0001-Fix-return-value-in-test_libver_bounds_open.patch
- Rebase patches (tab / space conversion):
  * PPC64LE-Fix-long-double-handling.patch
  * hdf5-buildcompare.patch
  * hdf5-mpi.patch
- Rebase Disable-phdf5-tests.patch
* Tue Jun 19 2018 eich@suse.com
- Handle license file using %license where applicable.
- Package example package also for HPC build and create
  a master file for it.
Version: 1.10.5-bp152.1.13
* Fri Apr 17 2020 Egbert Eich <eich@suse.com>
- Fix .so number in baselibs.conf for libhdf5_fortran libs (boo#1169793).
* Thu Apr 02 2020 Egbert Eich <eich@suse.com>
- Fix library link flags on pkg-config file for HPC builds (boo#1134298).
* Mon Jan 20 2020 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Remove bogus undefines of suffix and mpi_flavor. suffix is the
  name of an RPM built-in (like expand or echo), and since RPM 4.15
  trying to alter a built-in is an error. Fixes built of serial
  flavor on Tumbleweed. See https://rpm.org/user_doc/macros.html
* Tue Dec 10 2019 Stefan Brüns <stefan.bruens@rwth-aachen.de>
- Add compat provides for renamed hdf5-openmpi{,-devel} package,
  see https://en.opensuse.org/openSUSE:Package_dependencies
- Fix openmpi1 package naming for SLE/Leap <= 15.1
* Thu Nov 28 2019 Egbert Eich <eich@suse.com>
- Add HPC support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
* Thu Nov 28 2019 Egbert Eich <eich@suse.com>
- Disable openmpi1 builds for SLE/Leap > 15.1.
- Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773).
* Thu Oct 24 2019 Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
- openmpi has been renamed into openmpi1
* Tue Sep 10 2019 Ana Guerrero Lopez <aguerrero@suse.com>
- Use -ffat-lto-objects to provide a proper static library.
* Tue Sep 03 2019 Ana Guerrero Lopez <aguerrero@suse.com>
- Re-list hdf5-mpi.patch in the spec file for the sake of a avoiding
  a script rejecting the package automatically.
* Fri Aug 23 2019 Ana Guerrero Lopez <aguerrero@suse.com>
- Update to version 1.10.5: (jsc#SLE-8501)
  * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt
- Security bugs fixed:
  * CVE-2018-17233: A SIGFPE signal is raised in the function
  H5D__create_chunk_file_map_hyper. (bsc#1109166)
  * CVE-2018-17434: Memory leak in the H5O__chunk_deserialize()
  function in H5Ocache.c (bsc#1109167)
  * CVE-2018-17437: A SIGFPE signal is raised in the function
  H5D__chunk_set_info_real. (bsc#1109168)
- Bump fortran library soname, sonum_F from 100 to 102.
- Adjust library installation path, use %hpc_prefix/lib64 in x86_64
  and %hpc_libdir in all other cases
- Patches refreshed:
  * hdf5-LD_LIBRARY_PATH.patch
  * hdf5-1.8.11-abort_unknown_host_config.patch
  * PPC64LE-Fix-long-double-handling.patch
  * hdf5-Remove-timestamps-from-binaries.patch
  * Disable-phdf5-tests.patch
- Patch disabled, upstream have changed the file that was being patched,
  while it could be ported, it's unknown if this patch is still needed.
  * hdf5-mpi.patch
- Patch removed, merged upstream
  * 0001-Fix-return-value-in-test_libver_bounds_open.patch
* Thu Jul 04 2019 Egbert Eich <eich@suse.com>
- Since build machine size issues do not seem to go way, make
  the %check stage optional: enable with '--with check'.