ghc-hPDB

Protein Data Bank file format is a most popular format for holding biological
macromolecular data.
This is a very fast sequential parser:

below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared

with

11s of RASMOL 2.7.5,

or 2m15s of BioPython with Python 2.6 interpreter.


In its parallel incarnation it is most probably the fastest parser for PDB
format.
It is aimed to not only deliver event-based interface, but also a high-level
data structure for manipulating data in spirit of BioPython's PDB parser.
<http://dx.doi.org/10.1186/1756-0500-6-483 hPDB - Haskell library for
processing atomic biomolecular structures in Protein Data Bank format - Michal
Jan Gajda. BMC Research Notes 2013, 6:483.>.

          

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License: BSD-3-Clause
URL: https://hackage.haskell.org/package/hPDB