ghc-Taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and
visualisation for the NCBI (National Center for Biotechnology Information)
Taxonomy datasources.
It can utilize information from the <http://www.ncbi.nlm.nih.gov/taxonomy
Entrez> REST interface via <https://github.com/eggzilla/EntrezHTTP EntrezHTTP>,
as well as from the files of the Taxonomy database
<ftp://ftp.ncbi.nih.gov/pub/taxonomy/ dump>.
Input data is parsed into a FGL based datastructure, which enables a wealth of
processing steps like node distances, retrieval of parent nodes or extraction
of subtrees.
Trees can be visualised via dot-format (<http://graphviz.org/ graphviz>)
<<http://www.tbi.univie.ac.at/~egg/taxonomy.svg dot>>
or via json-format (<http://d3js.org/d3js>).
The <https://hackage.haskell.org/package/TaxonomyTools TaxonomyTools> package
contains tools based on this package.

          

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License: GPL-3.0+
URL: https://hackage.haskell.org/package/Taxonomy