RNAlien is a tool for automatic construction of RNAfamily models from a single sequence.
It is available as a commandline tool, for testing or construction of few sequences the webservice can be used.
The source code of RNAlien, as well as the webserver is open source and available via GitHub (License GPL-3):
<https://github.com/eggzilla/RNAlien RNAlien>
<https://github.com/eggzilla/AlienServer AlienServer>
TaxonomyTools which can be used to visualise the organisms included in a RNAlien result can be found here (License GPL-3):
<https://github.com/eggzilla/TaxonomyTools TaxonomyTools-Github>
<https://hackage.haskell.org/package/Taxonomy TaxonomyTools-Hackage>
For instruction how to use RNAlien please see the <http://rna.tbi.univie.ac.at/rnalien/help Help page>.
Dependencies:
<http://infernal.janelia.org/ Infernal>
<http://www.bioinf.uni-freiburg.de/Software/LocARNA/#download Locarna>
<https://www.tbi.univie.ac.at/~wash/RNAz/ RNAz>
<http://wash.github.io/rnacode/ RNAcode>
<http://www.tbi.univie.ac.at/RNA/index.html#download ViennaRNA package>
Installation via cabal-install:
> cabal install RNAlien.